Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTVNLDWDNLGFAYRKLPFRYISHFKDGKWDDGKLTDDATLHISESSPALHYGQQAFEGLKAYRTKDGSIQLFRPDQNAERLQRTADRLLMPHVPTDKFIAAVKSVVRANEEFVPPYGTGATLYIRPLLIGVGDIIGVKPAEEYIFTVFAMPVGSYFKGGLTPTNFIVSKEYDRAAPNGTGAAKVGGNYAASLLPGKYAHEKQFSDVIYLDPATHTKIEEVGAANFF--GITKDNQ---FITPLSPSILPSITKYSLLYLAKERFGMEAIEGDVFVDEL------DKFTEAGACGTAAVISPIGGIQ-NGDDFHVFYSETEVGPATRKLYDELVGIQFGDVEAPEGWIYKVD |
2COJ Chain:B ((68-378)) | -----------------------------WEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWV-PYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYF---FNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDH-QITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRIL-SKLTDIQYGREERDWTIVL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2COJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109275 for 2258 contacts (-48.4/contact) +
2D Compatibility (PS) -31280 + (NN) -10468 + (LL) 1432
1D Compatibility (HY) -22000 + (ID) 5200
Total energy: -176791.0 ( -78.30 by residue)
QMean score : 0.434
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