Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRKEIIDDVTMKRAITRITYEIIERNKNLDNIVLAGIKTRGVFLAKRIQERLKQLENLDIPVGELDTKPFRDDMKVEVD------TTTMPVDITDKDIILIDDVLYTGRTIRAAIDNLVSLGRPSRVSLAVLIDRGHRELPIRADYVGKNIPTSQFEEILVEVMEHDGYDRVSIIDPS
4P83 Chain:C ((8-178))
-----IMDEQAIRRALTRIAHEIIERNK--DGCVLVGIKTRGIYLARRLAERIEQIEGAPVPVGEIDITLYRD-------DEPLVKGTNVPFPVTERNVILVDDVLFTGRTVRAGMDAVMDLGRPARIQLAVLVDRGHRELPIRADFVGKNVPTSRSELIVVELDEVDQNDQVSIHEN-
General information:
TITO was launched using:
RESULT:
Template:
4P83.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110983 for 1207 contacts (-91.9/contact) +
2D Compatibility (PS) -16716 + (NN) -1847 + (LL) 1448
1D Compatibility (HY) -18400 + (ID) 4550
Total energy: -151048.0 ( -125.14 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_4P83.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P83-query.scw
PDB file :
Tito_Scwrl_4P83.pdb
: