Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MKDYINRILHFIKEHMTYHVNFIDDFLDIKWEKVS----NIHLRFWTTIIAYLVIFILSISTVILNLVLLFQGFLTQNPIIYLLFFITLVCAFYFAYKFITYTPTIVKNALQYIKKLKNV
1QSD Chain:A ((4-105))
TQLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKTYQG--------------------TEDVSDARSAITSAQELLDS
General information:
TITO was launched using:
RESULT:
Template:
1QSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72225 for 553 contacts (-130.6/contact) +
2D Compatibility (PS) -10078 + (NN) -6866 + (LL) 2728
1D Compatibility (HY) 3200 + (ID) 600
Total energy: -83841.0 ( -151.61 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1QSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QSD-query.scw
PDB file :
Tito_Scwrl_1QSD.pdb
: