Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVEKLVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGMIIPVVISVYEDKSFDFITKTPPAAVLLKKAAGVEKGSGEPNKTKVATVTRAQVQEIAETKMPDLNAANLESAMRMIEGTARSMGFTVTD
3CJQ Chain:B ((1-137))
--KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVAAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIR-------------------ITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARSMGVEVVG
General information:
TITO was launched using:
RESULT:
Template:
3CJQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71994 for 821 contacts (-87.7/contact) +
2D Compatibility (PS) -12885 + (NN) -4444 + (LL) 972
1D Compatibility (HY) -12000 + (ID) 3750
Total energy: -104101.0 ( -126.80 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_3CJQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CJQ-query.scw
PDB file :
Tito_Scwrl_3CJQ.pdb
: