Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVNITLEHKESGERLYLTSKNKRNTPDRLQL----KKYSPKLRKHVVFTEVK
1YSH Chain:D ((26-49))
--------------------------IKKMEVSQHSKYFCEFCGKFAVKRKAV
General information:
TITO was launched using:
RESULT:
Template:
1YSH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 536 for 66 contacts (8.1/contact) +
2D Compatibility (PS) -2090 + (NN) 260 + (LL) 1760
1D Compatibility (HY) -1200 + (ID) 150
Total energy: -884.0 ( -13.39 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_1YSH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YSH-query.scw
PDB file :
Tito_Scwrl_1YSH.pdb
: