Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFRRSGRLVDLTNYLLTHPHELIPLTFFSERYESAKSSISEDLTIIKQTFEQQGIGTLLTVPGAAGGVKYIPKMKQAEAEEFVQTLGQSLANPERILPGGYVYLTDI---LGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVT-EGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVEAEG-VDERLVD----EYMSLLTLSTINMKEKSIEIQNGNFLRFFKDNLLKNGETES
1Y0B Chain:A ((3-188))
----------------------------------------------------------------------------------AMEALKRKIEEEGVVLSDQVLKVDSFLNHQIDPLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIEKSFQPGRDELVKLGYRVESLARIQSLEEGK--------------------------
General information:
TITO was launched using:
RESULT:
Template:
1Y0B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151947 for 1401 contacts (-108.5/contact) +
2D Compatibility (PS) -19201 + (NN) -4780 + (LL) 7192
1D Compatibility (HY) -13600 + (ID) 2000
Total energy: -184336.0 ( -131.57 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0B-query.scw
PDB file :
Tito_Scwrl_1Y0B.pdb
: