Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIEL-NQNKFNGLYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHLG-TSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVMNEFNAKV
4QD3 Chain:A ((6-192))
--LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQ-
General information:
TITO was launched using:
RESULT:
Template:
4QD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106748 for 1548 contacts (-69.0/contact) +
2D Compatibility (PS) -19816 + (NN) -5624 + (LL) 576
1D Compatibility (HY) -11600 + (ID) 3250
Total energy: -146462.0 ( -94.61 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_4QD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QD3-query.scw
PDB file :
Tito_Scwrl_4QD3.pdb
: