Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSANVIAAHVDHRFRGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQ-E---KGLNKQAAARDCRYQFFEEIMSKHQ-ADYLALAHHGDDQVETMLMKLAKGTLGTGLAGMQPVRRFGTGRIIRPFLTITKEEILHYCHENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQQFLDWAENGGPSGVLDFPKGLKVVKSYQTCLFTFEQWQCKNVPFEYQISGAADETAVLPNGYLIEARHYADSPEEHGNAVFITSEKKVRFPLTIRTRKAGDRIKLKGMNGSKKVKDIFIDKKLPLQERDNWPIVTDASGEIIWIPGLKKSIFEDLVIPNSDRIVLQYRQHEKCRGQAKS |
2YWB Chain:A ((208-387)) | ---------------GKDRVLLAVSGGVDSSTLALLLAKA---GVDHLAVFVDHGLLR---LGEREEVEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIE----------------GLPED---LEFELLEPFRLLFKDEVRELALLLGLPDTL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YWB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89492 for 1053 contacts (-85.0/contact) +
2D Compatibility (PS) -15910 + (NN) -9138 + (LL) 21084
1D Compatibility (HY) -3200 + (ID) 1350
Total energy: -98006.0 ( -93.07 by residue)
QMean score : 0.415
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