Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNIAYIALGSNIGDRETYLRQAVALLHQHAAVTVTKVSSIYETDPVGYEDQAQFLNMAVEIKTSLNPFELLELTQQIENELGRTREV-RWGPRTADLDILLFNRENIETEQLIVPHPRMYERLFVLAPLAEICQQVEKEATSAETDQEGVRVWKQKSGVDEFVHSES
3UDE Chain:A ((2-135))
---VAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGR----ERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPEL-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3UDE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107799 for 978 contacts (-110.2/contact) +
2D Compatibility (PS) -13499 + (NN) -4454 + (LL) 2536
1D Compatibility (HY) -10000 + (ID) 3150
Total energy: -136366.0 ( -139.43 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_3UDE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UDE-query.scw
PDB file :
Tito_Scwrl_3UDE.pdb
: