Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLPKRVKYRREHRGKM--RGRAKGGTEVHFGEFGIQALEASWITNRQIEAARIAMTRYMKR--GGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKVLFEISGV-SEEVAREALRLASHKLPIKTKFVKREEIGGESNES
3J7Y Chain:N ((55-201))
-RAPLVPKVRREPKNLSDIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKMRKD-
General information:
TITO was launched using:
RESULT:
Template:
3J7Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7060 for 963 contacts (-7.3/contact) +
2D Compatibility (PS) -15248 + (NN) -3649 + (LL) 180
1D Compatibility (HY) -5200 + (ID) 2300
Total energy: -33277.0 ( -34.56 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_3J7Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J7Y-query.scw
PDB file :
Tito_Scwrl_3J7Y.pdb
: