Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIICKTPRELGIMREAGRIVALTHEELKKHIKPGISTKELDQIAERFI-KKQGAIPSFKGYNGFRGSICVSVNEELVHGIPG-SRVLKDGDIISIDIGAKLNGYHGDSAWTYPVGNISDDDKKLLEVTEESLYKGLQEAKPGERLSNISHAIQTYVENEQFSVVREYVGHGVGQDLHEDPQIPHYGPPNKGPRLKPGMVLAIEPMVNAGSRYVKTLADNWTVVTVDGKKCAHFEHTIAITETGFDILTRV
2GG9 Chain:A ((5-248))
----KTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT--
General information:
TITO was launched using:
RESULT:
Template:
2GG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85515 for 2109 contacts (-40.5/contact) +
2D Compatibility (PS) -26675 + (NN) -13709 + (LL) 964
1D Compatibility (HY) -22000 + (ID) 5650
Total energy: -152585.0 ( -72.35 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_2GG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GG9-query.scw
PDB file :
Tito_Scwrl_2GG9.pdb
: