Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNHFYVWHIKRVKQLIIILIAAFAAASFFYIQRAVPLPVFSTDTGPKAIYKGETDSKDISLTFDISWGDERAEPILNTLKANGIKNATFFLSASWAERHPDTVARIVKDGHQIGSMGYAYKNYANLESSEIKKDMNRAQTAFEKLGVKDIQLLRPPTGQFNKNVLKVAKQYNYTVVHYSVNSQDWTNPGVEKIIDNV----TKQV-SGGDIILLHASDSAKQTEE-ALPDIIHQLKEKGLKNVTVGDLIANSDAKSAEVK
2Y8U Chain:A ((25-228))
------------------------------------------------VITQCTTPNTIALTFDDGPSE-YTPQLLDLLSRYSA-RATFFVLGDAAAQNPGLLQRMRDEGHQVGAHTYDHVSLPSLGYDGIASQMTRLEEVIRPALGVAPAYMRPPYLETNELVLQVMRDLDYRVISASVDTKDYENQDADAIINTSFQLFLDQLDAGGNIVLAHDIHY--WTVASLAERMLQEVNARGLIATTVGDCLGDGEIAW----
General information:
TITO was launched using:
RESULT:
Template:
2Y8U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58554 for 1682 contacts (-34.8/contact) +
2D Compatibility (PS) -21841 + (NN) -13228 + (LL) 5636
1D Compatibility (HY) -10800 + (ID) 2600
Total energy: -101387.0 ( -60.28 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_2Y8U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y8U-query.scw
PDB file :
Tito_Scwrl_2Y8U.pdb
: