Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGSLSEH-KAGNRRFTLYLPPSYSTDSGGFPAVYVQDGSSLFQNQIELLESAFQ--QQRLPELVLIGIEPENRLDEYTPWPAASLS-----DRFTDFGGMGYHYLSDITNQFIPLIEENWNVTREPQSRGMIGASLGGLISMFAILKYPSMFGKIGSISGSYWYENAA--ETIHIS--SLKPGTARVFMSIGSEEGR-------EKQSIQRHMLKKTKQVHQSLK---EKGFTEDQLCLSIEKGAVHHHKYFCKQFINALEWLYGKNRSTL
3GFF Chain:A ((16-271))
---RLESRLLKETREYVIALPEGYAQSLEAYPVVYLLDGEDQFDHMASLLQFLSQGTMPQIPKVIIVGIHNTNRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTN---GINVLVGHSFGGLVAMEALRTDRPLFSAYLALDTSLWFDSPHYLTLLEERVVKGDFKQKQLFMAIANNPLSPGFGVSSYH-------KDLNLAFADKLTKLAPKGLG---FMAKYYPEETHQSVSHI-GLYDGIRHLFKDFAI--
General information:
TITO was launched using:
RESULT:
Template:
3GFF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101172 for 1872 contacts (-54.0/contact) +
2D Compatibility (PS) -24661 + (NN) -11954 + (LL) 1372
1D Compatibility (HY) -14000 + (ID) 2350
Total energy: -152765.0 ( -81.61 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_3GFF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFF-query.scw
PDB file :
Tito_Scwrl_3GFF.pdb
: