Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQDISLSFYKPEHLPELQSFTLTNDDKRFTS------LPKEVLSQALGIQDRYPVVILKDDLPVGFFILHASKETLASYSNNPFALLLSSLSLTAVHHGKGYAKKAMLLLPAFVSGYFPWCDEIILAVNHLNIRAKHLYMKSGFLDKGRRRI----GPLGEQLILHHFL
4L8A Chain:A ((3-159))
--MQLSHRPAETGDLETVAGFPQDRDELFYCYPKAIWPFSVAQLAAAIAER-RGSTVAVHDGQVLGFANFYQW-Q-------HGDFCALGNMMVAPAARGLGVARYLIGVMENLAREQ-YKARLMKISCFNANAAGLLLYTQLGYQPRAIAERHDPDGRRVALIQMDKP-
General information:
TITO was launched using:
RESULT:
Template:
4L8A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105934 for 1127 contacts (-94.0/contact) +
2D Compatibility (PS) -16271 + (NN) -8024 + (LL) 884
1D Compatibility (HY) -400 + (ID) 1000
Total energy: -130745.0 ( -116.01 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_4L8A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L8A-query.scw
PDB file :
Tito_Scwrl_4L8A.pdb
: