Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDKFLNNRWAVKIIALLFALLLYVAVNSNQAPTPKKPGESFFPTSTTDEATLTDIPVKAYYDDENYVVTGVPQTVNVTIKGSTSAVKKARQTKNFEIYADMEHLKTGTHKVELKAKNVSDGLTISINPSVTTVTIQERTTKSFPVEVEYYNKSKMKKGYSPEQPIVSPKNVQITGSKNVIDNISLVKASVNLENADETIEKEAKVTVYDKDGNALPVDVEPSVIKITVPVTSPSKKVPFKIERTGSLPDGVSIANIESSPSEVTVYGSQDVLDSLEFIDGVSLDLSKINKDSDIEADIPLPDGVKKISPSKVTLHIEVDSEADQKFENVPIKTVGLSSSQNI-EFLDPESQAIDVTAKGSPTNINKLKKSDIELYVNVSDLEDGEHSVKLE-VNGPQNVTWSLGRKNAKIKLTSKKSNTSTNDNSSNTSGNQDTDKQTNDQKNNQQEDTKNTDKNNNDQNQDGNKDQNQDQDEDESTANSQSSSE |
1FEU Chain:A ((99-176)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YVPLRFVGTPAGVRAGGVLQE--IHRDILVKVSPRNIP----E--FIEVDVSGLEIGD-SLHASDLKLPPGVELAVSPEETIAAVVP----------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1FEU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -5496 for 513 contacts (-10.7/contact) +
2D Compatibility (PS) -8105 + (NN) -3621 + (LL) 19776
1D Compatibility (HY) -4400 + (ID) 1000
Total energy: -2846.0 ( -5.55 by residue)
QMean score : 0.284
|
|
|