Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRFLKALPRRAEVQYDCLDRTLETQENVNLNIRVNVKEVATWGVNTCIISLKGLDNADDRFVLPEVNTALALFPLSIAADCLLMLPCISVVMSISSVMKSVTVE
2LT1 Chain:A ((1-75))
--AGHMPEGSASLQLAVGDRVVYPNQGVCRVSAIDVKEVA--GQKLTFVTMR-REEDGAVVMVPEGKVLAI------------------------GVRKVASAE
General information:
TITO was launched using:
RESULT:
Template:
2LT1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4319 for 467 contacts (-9.2/contact) +
2D Compatibility (PS) -7630 + (NN) 1785 + (LL) 2700
1D Compatibility (HY) -400 + (ID) 800
Total energy: -8664.0 ( -18.55 by residue)
QMean score : 0.197
(partial model without unconserved sides chains):
PDB file :
Tito_2LT1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LT1-query.scw
PDB file :
Tito_Scwrl_2LT1.pdb
: