Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKTINIVAGGPKNLIPDLTGYTDEHTLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEK-QPDIIQIFGITGGRADHFLGNIQLLYKGVKTN-IK-IRLIDKQNHIQMFPPGEYDIEKDENKRYISFIPFSEDIHELTLTGFKYPLNNCHITLGSTLCISNELIHSRGTFSFAKGILIMIRSTD
3IHK Chain:A ((2-208))-TKVALFSGGDLTYF------TRDFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAKAKKLVMAPAEKNDTDTELALKTIFDCFGRVEIIVFGAFGGRIDHMLSNIFLPSDPDLAPFMRCFKLRDEQNLVEFFPAGQHQIEQATDMVYISFMAANG--AHLSIQDAKYELTEENYFQK-KIYSSNEFKDKPICFSVASGYVVVIQTKD


General information:
TITO was launched using:
RESULT:

Template: 3IHK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1065 -129781 -121.86 -636.18
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : -121.86
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.452

(partial model without unconserved sides chains):
PDB file : Tito_3IHK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3IHK-query.scw
PDB file : Tito_Scwrl_3IHK.pdb: