Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKSLEEKTIAKEQIFSGKVIDLYVEDVELPNGKASKREIVKH-------PGAVAVLAVTDEG----KIIMVKQFRKPLERTIVEIPAGKLEKGEEPEYTALRELEEETGYTAKKLTKITAFYTSPGFADEIVHVFL----AEELSVLEEKRELDEDEFVEVMEVTLEDALKLVESREVYDAKTAYAIQYLQLKEALQAQK
2DSD Chain:B ((20-186))--------ISEELISEGKWVKLEKTTYMDPTGKTRTWESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLDA-------------------------


General information:
TITO was launched using:
RESULT:

Template: 2DSD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 646 35785 55.39 235.43
target 2D structure prediction score : 0.32
Monomeric hydrophicity matching model chain B : 0.75

3D Compatibility (PKB) : 55.39
2D Compatibility (Sec. Struct. Predict.) : 0.32
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.392

(partial model without unconserved sides chains):
PDB file : Tito_2DSD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2DSD-query.scw
PDB file : Tito_Scwrl_2DSD.pdb: