Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSAVTESVLESIISPVTMSEFLEEYW-PVKPLVARGEVERFTSIPGFEKVRTLENVLAIYNN-PVMVVGDAVIEESEGITDRFLVSPAEALEWYEKG---AALEFDFT--DLFIPQVRRWIEKLKAELRLPA--GTSSKAIVYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYD-----LSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLDLMLAALRKKLISDNRFRELAVNHQSLHESSKSELNGYLESLIQTLSENAETLTPEQIFQSQDSDFDPYQSTQLVFRQLLTSYKF
4GJZ Chain:A ((5-235))-----------RLHRPSLQHFREQFLVPGRPVILKGVAD---HWPCMQKWS-LEYIQEIAGCRTVPVEVG---------WSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISI-PDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEK-----FPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWWS------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4GJZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 958 -2567 -2.68 -12.22
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.62

3D Compatibility (PKB) : -2.68
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.444

(partial model without unconserved sides chains):
PDB file : Tito_4GJZ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4GJZ-query.scw
PDB file : Tito_Scwrl_4GJZ.pdb: