Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGA-EIVSPGSVLVSGRLLSDITRALPNKP-VDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLP-EETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIG-GSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVAD-RGAQVRMEFADGSVRLSA-GADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG |
| 4TR8 Chain:A ((9-382)) | ----GLVPRGSHMHFTIQREALLKPLQLVAGVVE---TLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMCSLDAQIPS-QDRHQVIVPRKGILELARLLTEQDGEVGIVLG-------QHHIRATTGEFTFTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ-EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADN------------------DDSAYVVMPMR--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4TR8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -260439 for 2937 contacts (-88.7/contact) +
2D Compatibility (PS) -39810 + (NN) -17459 + (LL) -104
1D Compatibility (HY) -23200 + (ID) 5300
Total energy: -346312.0 ( -117.91 by residue)
QMean score : 0.597
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