Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTRLQAPVAVTPPLPTRRNAELLLLCFAAVITFAALLVVQANQDQGVPWDLTSYGLAFLTLFGSAHLAIRRFAPYTDPLL----LPVVALLNGLGLVMIHRLDLVDNEIGEHRHPSANQQMLWTLVGVAAFALVVTFLKDHRQLARYGYICGLAGLVFLAVPALLPAALSEQNGAKIWIRLPGFSIQPAEFSKILLLIFFSAVLVAKRGLFTSAGKHLLGMTLPRPRDLAPLLAAWVISVGVMVFEKDLGASLLLYTSFLVVVYLATQRFSWVVIGLTLFAAGTLVAYFIFEHVRLRVQTWLDPFADPDGTGYQIVQSLFSFATGGIFGTGLGNGQPDTVPAASTDFIIAAFGEELGLVGLTAILMLYTIVIIRGLRTAIATRDSFGKLLAAGLSSTLAIQLFIVVGGVTRLIPLTGLTTPWMSYGGSSLLANYILLAILARISHGARRPLRTRPRNKSPITAAGTEVIERV---------------- |
4P5F Chain:A ((8-374)) | LT-------------PTEAAVLRELRLHRPQLPLDTLLFTDPNKD---PDDVVTYTIA-------KQLQADGFLRLTDVVVTLGDADMRSQRAQLAKGVFDRLALPDVRVARGQD----------------YPMTSTQAREHSK--------------FLAEGAALRAAPDAVHTDGVRAMCERLATSPHKLGMVVI-----------------AGMTDASALLAEAGDLVREKVASITIMGGIDPARDADGLVQPDTRAYNNAT-------------DIHAARALYRRAQQLGIPLRILT---------------KEAAYKAAVPPAFYEGIARNG-------------HPVGEYLRDVQKNALKGLWEGIQ-ANLIPGLDTAWFFRTFVAGALS------FDAIWPQVTKL----------------NLYDPLTLLAALPGTARLLFQPTPMHREGASPVEHVGHAEVVRPEKARLLLSALAKAALV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P5F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -284031 for 2867 contacts (-99.1/contact) +
2D Compatibility (PS) -33539 + (NN) -25 + (LL) 9284
1D Compatibility (HY) -4000 + (ID) 3700
Total energy: -316011.0 ( -110.22 by residue)
QMean score : 0.255
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