Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MARVTLVLRYAARSDRGLVRANNEDSVYAG---ARLLALADGMGGHAAGEVASQLVIAALAHLDDDEP---GGDLLAKLDAAVRAGNSAIAAQVEMEPDLEGMGTTLTAILFA--GNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDEGRITPEEAHSHPQRSLIMRALTGHE-VEPTLTMREARAGDRYLLCSDGLSDPVSDETILEALQIPEVAESAHRLIELALRGGGPDNVTVVVADVVDYDYGQTQPILAGAVSGDDDQLTLPNTAAGRASAISQRKEIVKRVPPQADTFSRPRWSGRRLAFVVALVTVLMTAGLLIGRAIIRSNYYVADYAGSVSIMRGIQGSLLGMSLHQPYLMGCLSPRNELSQISYGQSGGPLDCHLMKLEDLRPPERAQVRAGLPAGTLDDAIGQLRELAANSLLPPCPAPRATSPPGRPAPPTTSETTEPNVTSSPASPSPTTSAPAPTGTTPAIPTSASPAAPASPPTPWPVTSSPTMAALPPPPPQPGIDCRAAA |
| 2J82 Chain:A ((2-240)) | --------DVAGLTDCGLIRKSNQDAFYIDEKHQRFFIVADGM---AGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQAF-AANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQLQQITSDHTWIAQA----------------RHVLSQCLGREDLSQIDIQPIDLEPGDRLLLCSDGLTEELTDDVISIYLSEPNVQKAAAALVDAAKTHGGRDNVTVVVISV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J82.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -113465 for 1892 contacts (-60.0/contact) +
2D Compatibility (PS) -22578 + (NN) -9023 + (LL) 12744
1D Compatibility (HY) -12400 + (ID) 3850
Total energy: -148572.0 ( -78.53 by residue)
QMean score : 0.421
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