Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------MEPKRSRLVVCA-PEPSHAREFPDVAVFSG-GRANASQAERL-----------------ARAVGRVLADRGVTG------------------------------GARVRLTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPA--LIRLDRQIVRA-------SAQWCPR--------PWPDRPR-RRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYD-----VH-LFTDAETGEDAVVYRAGPSGL-RLARQHHVFP---------------PGWSRCRAPAGPPVPL-IVNSRPTPVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSR-YDGNLGLITPTGDGVADGLA----------- |
| 4DIM Chain:A ((3-400)) | DNKRLLILGAGRGQLGLYKAAKELGIHTIAGTMPNA-HKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLDTGIVSLARICDKENLVGLNEEAAIMCGDKYKMKEAFKKYNVNTARHFVVRNENELKNALENLKL-PVIVKATDLIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEGYEFGAQAFVYKNDVLFVMPHGDETYMSHTAVPVGHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILKDNEVYIIELTGRVGANCLPELVEINYGIEYYKMIASMAISENPLVFWSQKSKENKAGLARMIIETEKSGILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDCIGQIIVKEETLDKCKDKLDVIINNINIILK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DIM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 13199 for 1696 contacts (7.8/contact) +
2D Compatibility (PS) -28001 + (NN) -3470 + (LL) 164
1D Compatibility (HY) 8400 + (ID) 600
Total energy: -10308.0 ( -6.08 by residue)
QMean score : -0.004
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