Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSARCQITGRTVGFGKAVSHS-HRRTRRRWPPNIQLKAYYLPSED---RRIKVRVSAQG------IKVIDRDGHRGRRRAARAGSAPAHFARQAGSSLRTAAIL-----------------------------------
4GEU Chain:A ((2-168))
-TSKIALFDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILARDHDLTVDFDAFPKVIIQHLLCPTEINIILDAEKNFCSFELFSKTPWSKGKIFSIKLHAVR
General information:
TITO was launched using:
RESULT:
Template:
4GEU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5427 for 521 contacts (-10.4/contact) +
2D Compatibility (PS) -9860 + (NN) -79 + (LL) 208
1D Compatibility (HY) -2000 + (ID) 500
Total energy: -17658.0 ( -33.89 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_4GEU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GEU-query.scw
PDB file :
Tito_Scwrl_4GEU.pdb
: