Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGEFDPKLRFAQSPVARLATSTPDGTPHLVPVVFALGA---RRPAEATGADVIYTAVDAKR--KTTQRLRRLANLEHNPRASVLVDSYADDWTQLWWVRADGVAAIHRDGEVMRAAYRLLRAKYAQYQSVPLNGPVIAIAVQRWASWHA
4ZKY Chain:A ((5-143))
---FDAVTAFADAPAAVLSTLNADGAPHLVPVVFAVHVPHVE-------GQPARIYTAVDAKRKTTRNLRRLANIDRDSRVSLLVDHYSDDWTQLWWVRADGVATTHHSGDEVATGYALLRAKYHQYERVSLDGPVISVEVSRWASWQA
General information:
TITO was launched using:
RESULT:
Template:
4ZKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71434 for 939 contacts (-76.1/contact) +
2D Compatibility (PS) -14894 + (NN) -8043 + (LL) 372
1D Compatibility (HY) -11200 + (ID) 3650
Total energy: -108849.0 ( -115.92 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_4ZKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZKY-query.scw
PDB file :
Tito_Scwrl_4ZKY.pdb
: