Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSNQKAILAGGCFWGLQDLIRN--QPGVVSTRVGYSGG------NIPNATYRN----HGTHAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIF-YFDEQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQRYPNGYTC--HFVRPGWRLPRRTAESALRASLSPELGT
3PIL Chain:B ((21-182))
--------LACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELA--KIKE-EWQPKWGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGYACPTHYLR------------------------
General information:
TITO was launched using:
RESULT:
Template:
3PIL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60868 for 1068 contacts (-57.0/contact) +
2D Compatibility (PS) -16252 + (NN) -11437 + (LL) 2132
1D Compatibility (HY) -11200 + (ID) 3000
Total energy: -100625.0 ( -94.22 by residue)
QMean score : 0.733
(partial model without unconserved sides chains):
PDB file :
Tito_3PIL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PIL-query.scw
PDB file :
Tito_Scwrl_3PIL.pdb
: