Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGD---FDQI-----DIGVVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA
4W4M Chain:A ((21-79))
-----------------------------KDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITV----------AEPDFTAAVYWIKTYQLPP----------
General information:
TITO was launched using:
RESULT:
Template:
4W4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18505 for 316 contacts (-58.6/contact) +
2D Compatibility (PS) -5575 + (NN) -2701 + (LL) 3204
1D Compatibility (HY) -800 + (ID) 400
Total energy: -24777.0 ( -78.41 by residue)
QMean score : 0.642
(partial model without unconserved sides chains):
PDB file :
Tito_4W4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W4M-query.scw
PDB file :
Tito_Scwrl_4W4M.pdb
: