Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDLVRVERKGRVTTVILNRPASRNAVNGPTAAALCAAFEQFDRDDAASVAVLWGAGGTFCAGADLKAFGTPEANSVHRTGPGPMGPSRMMLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDMILTGRGVPADEALAMGLANRVVPKGQARQAAEELAAQLAALPQQCLRSDRLSALHQWGLPESAALDLEFASIARVAGEALEGARRFAAGAGRHGAPAPRAEQGDTL
4QFE Chain:F ((9-234))
---PVRIERNGPVTTVIIDRPEARNAVNGPTAAALFAAFEEFDADDTASVAVLTGANGTFCAGADLKAFGTPEANQVHREGPGPMGPSRMDLSKPVIAAISGYAVAGGLELALWCDLRVVDEDATMGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRAVDAAEAYAIGLANRVVPTGQARQAAEELAADLARLPQQCMRADRLSALHQWGESENAAMDFEFASI----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4QFE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142322 for 1941 contacts (-73.3/contact) +
2D Compatibility (PS) -25320 + (NN) -15051 + (LL) 1860
1D Compatibility (HY) -25200 + (ID) 9400
Total energy: -215433.0 ( -110.99 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_4QFE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QFE-query.scw
PDB file :
Tito_Scwrl_4QFE.pdb
: