Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEPLRVPPSAPARLVVLASGTGSLLRSLLDAAVGDYPARVVAVGVDRECRAA--EIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVGRTATMGRKVTIG
1RBY Chain:D ((1-186))
------------ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVAS-------------------
General information:
TITO was launched using:
RESULT:
Template:
1RBY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134810 for 1489 contacts (-90.5/contact) +
2D Compatibility (PS) -20879 + (NN) -13085 + (LL) 1608
1D Compatibility (HY) -11200 + (ID) 3450
Total energy: -181816.0 ( -122.11 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_1RBY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RBY-query.scw
PDB file :
Tito_Scwrl_1RBY.pdb
: