Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSVANLKDLLAEGVSGRGVLVRSDLNVPLDEDGTITDAGRIIASAPTLKALLDADAK-VVVAAHLGRPKDGPDP-TLSLAPVAVALGEQLGRHVQLAGDVVGADALARAEGLTGGDILLLENIRFDKRETSKNDD---DRRALAKQLVE-----LVGTGGVFVSDGFGVVHRKQASVYDIATLLPHYAG-TLVADEMRVLEQLTSSTQRPYAVVLGGSKVSDKLGVIESLATKADSIVIGGGMCFTFLAA-QGFSVGTSLLEDDMIEVCRGLLETYHD---VLRLPVDLVVTEKFAADSPP-QTVDVGAVPNGLMGLDIGPGSIKRFSTLLSNAGTIFWNGPMGVFEFPAYAAGTRGVAEAIVAATGKGAFSVVGGGDSAAAVRAMNIPEGAFSHISTGGGASLEYLEGKTLPGIEVLSREQPTGGVL |
3C3C Chain:B ((6-419)) | --LSNKLTLDKLDVKGKRVVMRVDFNVPM-KNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCV----EKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSM--VGVNLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGG--------------DKVSHVSTGGGASLELLEGKVLPGVDALSN-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C3C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -250741 for 3265 contacts (-76.8/contact) +
2D Compatibility (PS) -40473 + (NN) -13322 + (LL) 1208
1D Compatibility (HY) -32400 + (ID) 7650
Total energy: -343378.0 ( -105.17 by residue)
QMean score : 0.541
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