Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLAAIAAGGPLP
1B9B Chain:B ((1-252))
ITRKLILAGNWKMHKTISEAKKFVSLLVNELHD--VKEFEIVVCPPFTALSEVGEILSGRNIKL--GAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLK-ESFIELARIMRG----
General information:
TITO was launched using:
RESULT:
Template:
1B9B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173654 for 2124 contacts (-81.8/contact) +
2D Compatibility (PS) -28375 + (NN) -20671 + (LL) -148
1D Compatibility (HY) -25200 + (ID) 5750
Total energy: -253798.0 ( -119.49 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_1B9B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B9B-query.scw
PDB file :
Tito_Scwrl_1B9B.pdb
: