Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVALIWLIAALVLVGAEALTGDMFLLMLGGGALAASVSSWLLAWPMWADGAVFLLVSVLLLVLVRPAVRRRLTQTKGVQLGIEALEGKKAVVLGRVARDGGQVKLDGQVWTARPLNDGDVFEPGDSVTVVQIDGATAVVFKDV----
2EXD Chain:A ((72-145))
----------------------------------------------------------------------RRETTDIGGGKYTFELKGKVGKVVKIA-EDHYLVEVEGDKWIAY---SDEKLSLGDRVMVVDVDGLKLKVKRIPPQLE
General information:
TITO was launched using:
RESULT:
Template:
2EXD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12936 for 405 contacts (-31.9/contact) +
2D Compatibility (PS) -7557 + (NN) 732 + (LL) 7508
1D Compatibility (HY) -400 + (ID) 1050
Total energy: -13703.0 ( -33.83 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_2EXD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EXD-query.scw
PDB file :
Tito_Scwrl_2EXD.pdb
: