Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDHKVPFNRPYMTGRELAYIAEAHSCGHLAGDGPFTRRSHAWLEQQTGCRKALLTPSCTAALEMMALLLDIEEGDEVILPSYTFVSTANAFVLRGGVPVFVDIRPDTLNIDETRIVDAITPRTKAIVPVHYAGVACEMDAIMKIATHHNLAVVEDAAQGAMASYRGRALGSIGDLGALSFHETKNVISGEGGALLVNS
3DR4 Chain:D ((25-220))
---PRISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITTGEGGMITTND
General information:
TITO was launched using:
RESULT:
Template:
3DR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123577 for 1592 contacts (-77.6/contact) +
2D Compatibility (PS) -21384 + (NN) -9174 + (LL) 104
1D Compatibility (HY) -12400 + (ID) 3600
Total energy: -170031.0 ( -106.80 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_3DR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DR4-query.scw
PDB file :
Tito_Scwrl_3DR4.pdb
: