Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLSGEYAPSPLDWSREQADTYMKSGGTEGTQLQGKPVILLTTVGAKTGKLRKTPLMRVEHDGQYAIVASLGGAPKNPVWYHNVVKNPRVELQDGTVTGDYDAREVFGDEKAIWWQRAVAVWPDYASYQTKTDRQIPVFVLTPVRAGG
3R5R Chain:E ((4-112))
----------------------------------KIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP-----
General information:
TITO was launched using:
RESULT:
Template:
3R5R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56067 for 785 contacts (-71.4/contact) +
2D Compatibility (PS) -12100 + (NN) -6190 + (LL) 1284
1D Compatibility (HY) -6800 + (ID) 2350
Total energy: -82223.0 ( -104.74 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_3R5R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5R-query.scw
PDB file :
Tito_Scwrl_3R5R.pdb
: