Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRAKAAPVAGPEVAANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPEDGSPVRGVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENLR
3LAJ Chain:C ((15-170))
--------------AANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPE-------VSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENLR
General information:
TITO was launched using:
RESULT:
Template:
3LAJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92339 for 1075 contacts (-85.9/contact) +
2D Compatibility (PS) -16855 + (NN) -10981 + (LL) 660
1D Compatibility (HY) -17600 + (ID) 7450
Total energy: -144565.0 ( -134.48 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_3LAJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LAJ-query.scw
PDB file :
Tito_Scwrl_3LAJ.pdb
: