Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDTVLGLSITPTTLGWVLAEGHGADGAILDRNELELHSGRNAQAIHTAEQLAAEVLLAHEVAAAGDHRLRVIGVTWNAEASAQAALLVESLTGAGFDNVVPVRRLRAIETLAQAIAPVIGYEQIAVCVLEHESATVVMVDTHDGKTQ---IAVKHVCRGL-------------------------------------------------------------------------S--------GLTSWLTGMFGRD---AWRPAGVVVVGSDSEVSEFSWQLERVLP-VPVFAQTMAQVTVARGAALAAAQSTEFTDAQLVADSVSQPTVAPRRSRHYAGAAAALAAAAVTFVASLSLAVGIQLAPHNDTGTAKHGAHKPTPRIAKAVAPAVPPPPTVTPPVPARAPRPAAQHEPPARVTSGEALTEPNPPEEQPNASAPQQDRNDSQPITRVLEHIPGAYGDSAPPAE |
| 4RTF Chain:D ((148-388)) | ---------------------------------------------------------------------ITTPAYFNDAQR-Q--ATKDAGQIAGLNVLRIVNEPTAAALAYGLD-K--KEQRILVFDLGGGTFDVSLLEIG-GVVEVRATSGDNHLGGDDWDQRVVDWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDNPLFLDEQLTRAEFQRITQDLLDRTRKPFQSVIADTGISVSEIDHVVLVGGSTRMPAVTDLVKELTGGKEPNKGVNPDEVVAVGAALQAGVL------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RTF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -102218 for 1089 contacts (-93.9/contact) +
2D Compatibility (PS) -15873 + (NN) -6988 + (LL) 13392
1D Compatibility (HY) 1600 + (ID) 1200
Total energy: -111287.0 ( -102.19 by residue)
QMean score : 0.334
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