Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRPRTDAIHHHVVVNAPIERAFAVFTTRFGDFKPREHNLLAIPITETVFECHAGGHIYDRGVDGSVCKWARVLVYEPPSRVLFTWDIGPTWRPETDLAKTSEVEVRFTAQSAETTRVDLEHRHLDRHGPGWESVADGVDSEAGWPLYLRRYTDLLCIQVQP-
1ZXF Chain:A ((1-155))
---NYDPFVRHSVTVKADRKTAFKTFLEGFPEWWPNNFRTTKVGAPL--GVDKKGGRWYEIDEQGEEHTFGLIRKVDEPDTLVIGWRLNGFGRIDPD--NSSEFTVTFVADGQKKTRVDVEHTHFDRMGTKHAKRVRNGMDK-GWPTILQSFQDKIDEEGAKK
General information:
TITO was launched using:
RESULT:
Template:
1ZXF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39554 for 1218 contacts (-32.5/contact) +
2D Compatibility (PS) -16604 + (NN) -7367 + (LL) 1068
1D Compatibility (HY) -2800 + (ID) 1850
Total energy: -67107.0 ( -55.10 by residue)
QMean score : 0.297
(partial model without unconserved sides chains):
PDB file :
Tito_1ZXF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZXF-query.scw
PDB file :
Tito_Scwrl_1ZXF.pdb
: