Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSATGPFSIGERVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETLQRGWNVVGLAVRPQHSMRGHTAFLVATRRLAPGAVAPAPLGRKREGRDG
5C1I Chain:B ((5-247))
--------------LKDRKGRAYLVFPKEGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSVHRPTLEEYLLHMKRSATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV--ENVRFHLGKLEEAELEEAAYDGVALALMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLE-RVLEVGWREWEVRLPVAHPRFQQVGHTAFLVALRR--------------------
General information:
TITO was launched using:
RESULT:
Template:
5C1I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162541 for 1933 contacts (-84.1/contact) +
2D Compatibility (PS) -26277 + (NN) -13273 + (LL) 700
1D Compatibility (HY) -14000 + (ID) 4900
Total energy: -220291.0 ( -113.96 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_5C1I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5C1I-query.scw
PDB file :
Tito_Scwrl_5C1I.pdb
: