Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSPDPYAALPKLPSFSLTSTS---ITDGQPLATPQVSGIMGAGGADASPQLRWSGFPSETRSFAVTVYDPDAPTL-----SGFWHWAVANLPANVTELPEGVGDGRELPGGALTLVNDAGMRRYVGAAPPPGHGVHRYYVAVHAVKVEKLDLPEDASPAYLGFNLFQHAIARAVIFGTYEQR
2JYZ Chain:A ((5-127))
---VPDVLDAV-PAGTIKVIYGDDLEVKQGNELTPTQVK---------DQPIVSWSGLEGKSNLLTLLMVDPDAPTRQDPKYREILHWSVVNIPGSNENP-----------------SGGHSLADYVGSGPPKDTGLHRYIFLLYRQEN-KIEE------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JYZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44924 for 753 contacts (-59.7/contact) +
2D Compatibility (PS) -12512 + (NN) -11567 + (LL) 2408
1D Compatibility (HY) -8000 + (ID) 1600
Total energy: -76195.0 ( -101.19 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_2JYZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JYZ-query.scw
PDB file :
Tito_Scwrl_2JYZ.pdb
: