Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGLNTAIATRVNGTPPPEVPIADIELGSLDFWALDDDVRDGAFATLRREAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHPDIFSSYPNITINDQTPELAEYFGSMIVLDDPRHQRLRSIVSRAFTPKVVARIEAAVRDRAHRLVSSMIANNPDR-QADLVSELAGPLPLQIICDMMGIPKADHQRIFHWTN-VILGFGDPDLATDFDEFMQVSADIGAYATALAEDRRVNHHDDLTSSLVEAEVDGERLSSREIASFFILLVVAGNETTRNAITHGVLALSRYPEQRDRWWSDFDGLAPTAVEEIVRWASPVVYMRRTLTQDIELRGTKMAAGDKVSLWYCSANRDESKFADPWTFDLARNPNPHLGFGGGGAHFCLGANLARREIRVAFDELRRQMPDV-VATEEPARLL-SQFIHGIKTLPVTWS |
2YOO Chain:B ((29-394)) | ------------------------------------------------------WMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIR-PDQ-PGMP----YMIDMDDPQHLLRRKLVNAGFTRK---RVMDKV-DSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVD-LLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAF-GFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFT |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YOO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -198812 for 2976 contacts (-66.8/contact) +
2D Compatibility (PS) -38510 + (NN) -16953 + (LL) 3596
1D Compatibility (HY) -27600 + (ID) 6950
Total energy: -285229.0 ( -95.84 by residue)
QMean score : 0.503
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