Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTI-------------------------NYQFGDVDAHGAMIRAQAGLLEAEHQAIVRDVLAAGDFWGGAGSVACQEFITQLGRN----------FQVIYEQANAHGQKVQAAG------NNMAQTDSAVGSSWA----- |
2KHM Chain:A ((1-140)) | MASMTGGQQMGRGSMGAASAAVSVGGYGPQSSSAPVASAAASRLSSPAASSRVSSAVSSLVSSGPTNQAALSNTISSVVSQVSASNPGLSGCDVLVQALLEVVSALVSILGSSSIGQINYGASAQYTQMVGQSVAQALAG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KHM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1305 for 553 contacts (-2.4/contact) +
2D Compatibility (PS) -9962 + (NN) -2113 + (LL) 0
1D Compatibility (HY) 0 + (ID) 900
Total energy: -14280.0 ( -25.82 by residue)
QMean score : 0.257
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