Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA-GLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHLPEHAIVQFVKAICSPMALAS
1PVM Chain:A ((9-134))
-MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSI-IKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRA-----------------
General information:
TITO was launched using:
RESULT:
Template:
1PVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87379 for 931 contacts (-93.9/contact) +
2D Compatibility (PS) -13672 + (NN) -7038 + (LL) 2328
1D Compatibility (HY) -10000 + (ID) 1600
Total energy: -117361.0 ( -126.06 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_1PVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PVM-query.scw
PDB file :
Tito_Scwrl_1PVM.pdb
: