Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSSEPAHGATPKRSPSEGSADNAALCDALAVEHATIYGYGIVSALSPPG----VNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAAGYQLPMQVSSAADAARLAVRMENDGATAWRAVVEHA---ETADDRVFASTALTESAVMATRWNRVLGAWPITAAFPGGDE
5D8X Chain:A ((5-139))
-------------------KKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGAPNLQ--DLGKLLIGANTQEMLQCDLNLELKATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLG-------------
General information:
TITO was launched using:
RESULT:
Template:
5D8X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40340 for 949 contacts (-42.5/contact) +
2D Compatibility (PS) -14078 + (NN) -7874 + (LL) 808
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -63834.0 ( -67.26 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_5D8X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5D8X-query.scw
PDB file :
Tito_Scwrl_5D8X.pdb
: