Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEAFHTHSGIGVPLRRSNVDTDQIIPAVFLKRVTRTGFEDGLFAGWRSDPAFVLNLSPFDRGSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQDDVELLWKLIEQSPGLEITANLQDRIITAA--TVVLPF-KIDDHSAWRLLEGLDDIALTLRKLDEIEAFEGACAYWKPRTLPAP
3VBA Chain:A ((3-155))
----SIIKGRVWKF-GNNVDTDAILPARYLVYTKPEELAQFVMTGAD--PDFPKK---VKPGDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECKGIS-E----KVN--EGDELEVNLETGEIKNLTTGEVLKGQKLPEFMMEILEAGG-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VBA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123983 for 1231 contacts (-100.7/contact) +
2D Compatibility (PS) -16001 + (NN) -5019 + (LL) 3640
1D Compatibility (HY) -6800 + (ID) 2400
Total energy: -150563.0 ( -122.31 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_3VBA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VBA-query.scw
PDB file :
Tito_Scwrl_3VBA.pdb
: