Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRPYYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVVGE-HVQPGEL-SERYDAVIYAVGAQSDRMLNIPGE--DLPGSIAAVDFVGWYNAHPHFE--QVSPD--LSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK-RKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTP------GLPFDDQSGTIPN-VGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEGAECKSFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRIGLG |
| 1GTE Chain:A ((187-521)) | --SAKIALLGAGPASISCASFLARL-------GYSDITIFEKQEYVGGLSTSEI-PQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALR--------------------CGARRVFLVFRKGFVNIRAV------------------PEEV-----------------------ELA------KEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQD--ETGKWNE-DEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTS-EPWVFAGGDIVGMANTTV-ESVNDGKQASWYIHKYIQAQ------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GTE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158512 for 2552 contacts (-62.1/contact) +
2D Compatibility (PS) -32902 + (NN) -17242 + (LL) 9352
1D Compatibility (HY) -8400 + (ID) 2800
Total energy: -210504.0 ( -82.49 by residue)
QMean score : 0.419
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