Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILS-FYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGN------DAAESVAQFSISWNETHGKPPTRREIIEGYYGE--YVDKADMFIGFGR-FSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG |
| 5HC8 Chain:A ((9-236)) | ---------------------DEVTPNHVAIIIDGHRKWAKSRGVTVQEGHQ-TGVNNWKHIISRASQLGIKLLTIWALSPQNFNRSKMEVDFLMRIYEDFLRSD-VKELVTSQQDIQFSAIGDKSRL------PEYLQDAISYAEGLSQANKGMHFILAVAYGGREDIVEAARKIAAKVEHG-ILRPDDIDEATFEQHLMTNITKFPSPDLLIRAAGEQRLSNFFLWQLPFTEFYFTPKLFPDFGEADLLDALASYR------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 5HC8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -115245 for 1711 contacts (-67.4/contact) +
2D Compatibility (PS) -24576 + (NN) -15921 + (LL) 5288
1D Compatibility (HY) -400 + (ID) 1450
Total energy: -152304.0 ( -89.01 by residue)
QMean score : 0.448
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