Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPALVVGPAAWHAVHVTQSSSAITPGQTAELYPGDIKSVLLTAEQIQARIAELGEQIGNDYRELSATTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGSSTSSSGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
4RHU Chain:D ((20-198))
----------------------------------GDIKSVLLTAEQIQARIAELGEQIGNDYRE--ATTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSY---------VRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPR---
General information:
TITO was launched using:
RESULT:
Template:
4RHU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148093 for 1268 contacts (-116.8/contact) +
2D Compatibility (PS) -17984 + (NN) -4960 + (LL) 2608
1D Compatibility (HY) -26400 + (ID) 8400
Total energy: -203229.0 ( -160.28 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_4RHU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RHU-query.scw
PDB file :
Tito_Scwrl_4RHU.pdb
: