Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN
1NW2 Chain:E ((1-104))
-------ATMTLTDANF-QQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVL----
General information:
TITO was launched using:
RESULT:
Template:
1NW2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68719 for 771 contacts (-89.1/contact) +
2D Compatibility (PS) -11300 + (NN) -3802 + (LL) 316
1D Compatibility (HY) -13600 + (ID) 3000
Total energy: -100105.0 ( -129.84 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_1NW2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NW2-query.scw
PDB file :
Tito_Scwrl_1NW2.pdb
: