Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDRYCVFGNPIGHSKSPLIHRLFAEQTGEALVYDAQLAPLDDFPGFARRFFEQG-KGANVTVPFKEEAYRLVDELSERATRAGAVNTLIRLADGRLRGDNTDGAGLLRDLTANAGVELRGKRVLLLGAGGAVRGVLEPFLG-ECPAELLIANRTARKAVDLAERFADLGAVHGCGFAEVEG-PFDLIVNGTSASLAGDVPPLAQSVIEPGRTVCYDMMYAKEPTAFNRWAAERGAARTLDGLGMLVEQAAEAFFLWRGVRPASAPVLETLRRQLATV
1NYT Chain:C ((1-269))
METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIR-PGLRILLIGAGGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPG-IYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEE----
General information:
TITO was launched using:
RESULT:
Template:
1NYT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158040 for 2280 contacts (-69.3/contact) +
2D Compatibility (PS) -28850 + (NN) -12581 + (LL) 844
1D Compatibility (HY) -24800 + (ID) 7250
Total energy: -230677.0 ( -101.17 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_1NYT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NYT-query.scw
PDB file :
Tito_Scwrl_1NYT.pdb
: