Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAIYLAGPDVFRPDAEAHGETLKALCAE--FGFVGLYPLDHALPADIREPAAQAAWIYRANVGLIERADCVLANLEPFRGSEPDSGTAFEVGYALALGKPVYAYLSDAGAYAERLARLAPEWLGEHPGEDRDGWQLEGFGLPLNLMLAVPSRL---VAGGPREALRRLAEELGGNA
3EHD Chain:A ((4-161))
MTKIYFAGPLFSQADL-RYNAYLVEQIRQLDKTIDLYLPQENAAIND-KSAYADSKMIALADTENVLASDLLVALLD---GPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQ----------KLDALNEIAENQFHYLNLYTVGLIKLNGRVVSSEEDLLEEIKQRL----
General information:
TITO was launched using:
RESULT:
Template:
3EHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52635 for 1010 contacts (-52.1/contact) +
2D Compatibility (PS) -16559 + (NN) -6573 + (LL) 572
1D Compatibility (HY) -5200 + (ID) 2000
Total energy: -82395.0 ( -81.58 by residue)
QMean score : 0.336
(partial model without unconserved sides chains):
PDB file :
Tito_3EHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EHD-query.scw
PDB file :
Tito_Scwrl_3EHD.pdb
: